Posts by Collection

Code

You can find below the scripts developed in my research projects.

Modulation of astrocyte reactivity improves functional deficits in mouse models of Alzheimer’s disease.

Ceyzériat, K., Ben Haim, L., Denizot, A., Pommier, D., Matos, M., Guillemaud, O., Palomares, M.-A., Abjean, L., Petit, F., Gipchtein, P., Gaillard, M.-C., Guillermier, M., Bernier, S., Gaudin, M., Aurégan, G., Joséphine, C., Déchamps, N., Veran, J., Langlais, V., Cambon, K., Bemelmans, A.P., Baijer, J., Bonvento, G., Dhenain, M., Deleuze, J.-F., Oliet, S.H.R., Brouillet, E., Hantraye, P., Carrillo-de Sauvage, M.-A., Olaso, R., Panatier, A., Escartin, C., 2018. Modulation of astrocyte reactivity improves functional deficits in mouse models of Alzheimer’s disease. Acta Neuropathol. Commun. 6, 104. https://doi.org/10.1186/s40478-018-0606-1

Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity.

Denizot, A., Arizono, M., Nägerl, U.V., Soula, H., Berry, H., 2019. Simulation of calcium signaling in fine astrocytic processes: Effect of spatial properties on spontaneous activity. PLOS Comput. Biol. 15, e1006795. https://doi.org/10.1371/journal.pcbi.1006795

Simulating calcium signaling in fine astrocytic processes.

Denizot, A., 2019. Simulating calcium signaling in fine astrocytic processes (Doctoral dissertation, Université de Lyon)

Intracellular Calcium Signals in Astrocytes, Computational Modeling of.

Denizot, A., Berry, H., Venugopal, S., 2020. Intracellular Calcium Signals in Astrocytes, Computational Modeling of, in: Jaeger, D., Jung, R. (Eds.), Encyclopedia of Computational Neuroscience. Springer, New York, NY, pp. 1–12. https://doi.org/10.1007/978-1-4614-7320-6_100693-1

Simulation of Astrocytic Calcium Dynamics in Lattice Light Sheet Microscopy Images.

Badoual, A., Arizono, M., Denizot, A., Ducros, M., Berry, H., Nägerl, U.V. and Kervrann, C., 2021, April. Simulation of Astrocytic Calcium Dynamics in Lattice Light Sheet Microscopy Images. In 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI) (pp. 135-139). IEEE.

Stochastic Spatially-Extended Simulations Predict the Effect of ER Distribution on Astrocytic Microdomain Ca2+ Activity.

Denizot, A., Calì, C., Berry, H. and De Schutter, E., 2021, September. Stochastic Spatially-Extended Simulations Predict the Effect of ER Distribution on Astrocytic Microdomain Ca2+ Activity. In Proceedings of the Eight Annual ACM International Conference on Nanoscale Computing and Communication (pp. 1-5).

The endoplasmic reticulum in perisynaptic astrocytic processes: shape, distribution and effect on calcium activity.

Denizot, A., Castillo, M.F.V., Puchenkov, P., Calì, C. and De Schutter, E., 2022. The endoplasmic reticulum in perisynaptic astrocytic processes: shape, distribution and effect on calcium activity. bioRxiv.

Reinforcing Interdisciplinary Collaborations to Unravel the Astrocyte “Calcium Code”.

Covelo, A., Badoual, A., Denizot, A., 2022. Reinforcing Interdisciplinary Collaborations to Unravel the Astrocyte “Calcium Code”. J. Mol. Neurosci.

Control of Ca2+ signals by astrocyte nanoscale morphology at tripartite synapses.

Denizot, A., Arizono, M., Nägerl, U. V., Berry, H., & De Schutter, E. (2022). Control of Ca2+ signals by astrocyte nanoscale morphology at tripartite synapses. Glia, 1–14. https://doi.org/10.1002/glia.24258

Computational Models of Astrocyte Function at Glutamatergic Synapses.

Lenk, K., Denizot, A., Genocchi, B., Seppälä, I., Taheri, M., Nadkarni, S., Computational models of astrocyte function at glutamatergic synapses, in: “New Technologies for Glutamate Interactions: Neurons and Glia”, pp. 229–263, Springer US, 2024

Teaching

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During my PhD, I was enrolled as a “Doctorant Contractuel Enseignant”. I teached 64h per year to Master students in biology, for 3 years (total: 192h). I led the following classes: